Research Output 1976 2020

2015
2 Citations (Scopus)
Papilio glaucus
Papilionidae
butterfly
butterflies
color
5 Citations (Scopus)
Open Access
Anaplasma phagocytophilum
tick
effective population size
demography
ticks
2014
23 Citations (Scopus)

A central support system can facilitate implementation and sustainability of a classroom-based undergraduate research experience (CURE) in genomics

Lopatto, D., Hauser, C., Jones, C. J., Paetkau, D., Chandrasekaran, V., Dunbar, D., MacKinnon, C., Stamm, J., Alvarez, C., Barnard, D., Bedard, J. E. J., Bednarski, A. E., Bhalla, S., Braverman, J. M., Burg, M., Chung, H. M., DeJong, R. J., DiAngelo, J. R., Du, C., Eckdahl, T. T. & 53 others, Emerson, J., Frary, A., Frohlich, D., Goodman, A. L., Gosser, Y., Govind, S., Haberman, A., Hark, A. T., Hoogewerf, A., Johnson, D., Kadlec, L., Kaehler, M., Key, S. C. S., Kokan, N. P., Kopp, O. R., Kuleck, G. A., Lopilato, J., Martinez-Cruzado, J. C., McNeil, G., Mel, S., Nagengast, A., Overvoorde, P. J., Parrish, S., Preuss, M. L., Reed, L. D., Regisford, E. G., Revie, D., Robic, S., Roecklien-Canfield, J. A., Rosenwald, A. G., Rubin, M. R., Saville, K., Schroeder, S., Sharif, K. A., Shaw, M., Skuse, G., Smith, C. D., Smith, M., Smith, S. T., Spana, E. P., Spratt, M., Sreenivasan, A., Thompson, J. S., Wawersik, M., Wolyniak, M. J., Youngblom, J., Zhou, L., Buhler, J., Mardis, E., Leung, W., Shaffer, C. D., Threlfall, J. & Elgin, S. C. R., 21 Dec 2014, In : CBE Life Sciences Education. 13, 4, p. 711-723 13 p.

Research output: Contribution to journalArticle

Genomics
Sustainable development
sustainability
classroom
Research
55 Citations (Scopus)

A course-based research experience: How benefits change with increased investment in instructional time

Shaffer, C. D., Alvarez, C. J., Bednarski, A. E., Dunbar, D., Goodman, A. L., Reinke, C., Rosenwald, A. G., Wolyniak, M. J., Bailey, C., Barnard, D., Bazinet, C., Beach, D. L., Bedard, J. E. J., Bhalla, S., Braverman, J., Burg, M., Chandrasekaran, V., Chung, H. M., Clase, K., DeJong, R. J. & 64 others, DiAngelo, J. R., Du, C., Eckdahl, T. T., Eisler, H., Emerson, J. A., Frary, A., Frohlich, D., Gosser, Y., Govind, S., Haberman, A., Hark, A. T., Hauser, C., Hoogewerf, A., Hoopes, L. L. M., Howell, C. E., Johnson, D., Jones, C. J., Kadlec, L., Kaehler, M., Catherine Silver Key, S., Kleinschmit, A., Kokan, N. P., Kopp, O., Kuleck, G., Leatherman, J., Lopilato, J., MacKinnon, C., Martinez-Cruzado, J. C., McNeil, G., Mel, S., Mistry, H., Nagengast, A., Overvoorde, P., Paetkau, D. W., Parrish, S., Peterson, C. N., Preuss, M., Reed, L. K., Revie, D., Robic, S., Roecklein-Canfield, J., Rubin, M. R., Saville, K., Schroeder, S., Sharif, K., Shaw, M., Skuse, G., Smith, C. D., Smith, M. A., Smith, S. T., Spana, E., Spratt, M., Sreenivasan, A., Stamm, J., Szauter, P., Thompson, J. S., Wawersik, M., Youngblom, J., Zhou, L., Mardis, E. R., Buhler, J., Leung, W., Lopatto, D. & Elgin, S. C. R., 3 Mar 2014, In : CBE Life Sciences Education. 13, 1, p. 111-130 20 p.

Research output: Contribution to journalArticle

Students
Research
experience
student
Bioinformatics
41 Citations (Scopus)

Analysis of the population structure of Anaplasma phagocytophilum using multilocus sequence typing

Huhn, C., Winter, C., Wolfsperger, T., Wüppenhorst, N., Strašek Smrdel, K., Skuballa, J., Pfäffle, M., Petney, T., Silaghi, C., Dyachenko, V., Pantchev, N., Straubinger, R. K., Schaarschmidt-Kiener, D., Ganter, M., Aardema, M. L. & Von Loewenich, F. D., 3 Apr 2014, In : PLoS ONE. 9, 4, e93725.

Research output: Contribution to journalArticle

Open Access
Anaplasma phagocytophilum
Multilocus Sequence Typing
population structure
Animals
Anaplasmosis
3 Citations (Scopus)

An enzymatic analysis of loblolly pine and Sitka spruce auxin conjugate hydrolases and evolutionary implications

Campanella, J. J., Zaben, N., Enriquez, D., Smalley, J. V. & Ludwig-Müller, J., 20 Jul 2014, XII International Symposium on Plant Bioregulators in Fruit Production. McArtney, S. J. & Spann, T. (eds.). International Society for Horticultural Science, p. 79-87 9 p. (Acta Horticulturae; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter

Picea sitchensis
Pinus taeda
hydrolases
indole acetic acid
auxins
18 Citations (Scopus)

A phylogenetic examination of the primary anthocyanin production pathway of the Plantae

Campanella, J. J., Smalley, J. V. & Dempsey, M. E., 25 Jan 2014, In : Botanical Studies. 55, 1

Research output: Contribution to journalArticle

Plantae
anthocyanins
flavonoids
phylogeny
pigments
380 Citations (Scopus)

Comparative genomics reveals insights into avian genome evolution and adaptation

Avian Genome Consortium, 12 Dec 2014, In : Science. 346, 6215, p. 1311-1320 10 p.

Research output: Contribution to journalArticle

Genomics
Genome
Birds
Synteny
Gene Deletion
7 Citations (Scopus)

Differential assessment of designations of wetland status using two delineation methods

Wu, M. S., Kalma, D. & Treadwell-Steitz, C., 1 Jan 2014, In : Environmental Management. 54, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

Wetlands
wetland
Hydrology
Engineers
hydrology
8 Citations (Scopus)

Disease as a control of sea urchin populations in Nova Scotian kelp beds

Feehan, C. J. & Scheibling, R. E., 17 Mar 2014, In : Marine Ecology Progress Series. 500, p. 149-158 10 p.

Research output: Contribution to journalArticle

Echinoidea
macroalgae
Nova Scotia
adulthood
mass mortality
3 Citations (Scopus)
Porcellio
Armadillidium vulgare
Isopoda
Ants
indirect contact
23 Citations (Scopus)

Effects of sea urchin disease on coastal marine ecosystems

Feehan, C. & Scheibling, R. E., 1 Jan 2014, In : Marine Biology. 161, 7, p. 1467-1485 19 p.

Research output: Contribution to journalReview article

Echinoidea
marine ecosystem
Paracentrotus
reefs
reef
39 Citations (Scopus)

Evidence for a single loss of mineralized teeth in the common avian ancestor

Meredith, R., Zhang, G., Gilbert, M. T. P., Jarvis, E. D. & Springer, M. S., 12 Dec 2014, In : Science. 346, 6215, 1254390.

Research output: Contribution to journalArticle

Tooth Loss
Tooth
Birds
Dental Enamel
Vertebrates
4 Citations (Scopus)

Forest response and recovery following disturbance in upland forests of the Atlantic Coastal Plain

Schäfer, K. V. R., Renninger, H. J., Carlo, N. J. & Vanderklein, D., 26 Jun 2014, In : Frontiers in Plant Science. 5, JUN, 294.

Research output: Contribution to journalArticle

coastal plains
stomatal conductance
prescribed burning
leaves
canopy
7 Citations (Scopus)

Habitat fragmentation reduces occupancy of nest boxes by an open-country raptor

Brown, J. L., Collopy, M. W. & Smallwood, J., 17 Sep 2014, In : Bird Conservation International. 24, 3, p. 364-378 15 p.

Research output: Contribution to journalReview article

Falco sparverius
nest box
raptor
nest boxes
habitat fragmentation
2 Citations (Scopus)

Harbouring the enemy: Kelp holdfasts protect juvenile sea urchins from predatory crabs

Feehan, C., Francis, F. T. Y. & Scheibling, R. E., 1 Jan 2014, In : Marine Ecology Progress Series. 514, p. 149-161 13 p.

Research output: Contribution to journalArticle

Echinoidea
macroalgae
crab
crabs
refuge
48 Citations (Scopus)

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes

Xiong, W., He, L., Lai, J., Dooner, H. K. & Du, C., 15 Jul 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10263-10268 6 p.

Research output: Contribution to journalArticle

Plant Genome
Zea mays
Genome
DNA Transposable Elements
Arabidopsis
2 Citations (Scopus)

Mangrove loss leads to fish hyperutilization of seagrass beds in a UNESCO biosphere reserve

Bologna, P. A. X., May 2014, In : Journal of Fish Biology. 84, 5, p. 1620-1625 6 p.

Research output: Contribution to journalArticle

UNESCO
seagrass
mangrove
Virgin Islands of the United States
mangrove forests
18 Citations (Scopus)

Mating behavior, male sensory cilia, and polycystins in caenorhabditis elegans

O'Hagan, R., Wang, J. & Barr, M. M., Sep 2014, In : Seminars in Cell and Developmental Biology. 33, p. 25-33 9 p.

Research output: Contribution to journalReview article

TRPP Cation Channels
Cilia
Caenorhabditis elegans
Autosomal Dominant Polycystic Kidney
Neurons
5 Citations (Scopus)

Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics

Crum, K. P., Fuchs, H. L., Bologna, P. A. X. & Gaynor, J. J., 15 Dec 2014, In : Marine Ecology Progress Series. 517, p. 105-119 15 p.

Research output: Contribution to journalArticle

jellyfish
Scyphozoa
community dynamics
plankton
Copepoda
13 Citations (Scopus)

Molecular phylogeny and snp variation of polar bears (ursus maritimus), brown bears (u. arctos), and black bears (u. americanus) derived from genome sequences

Cronin, M. A., Rincon, G., Meredith, R. W., Macneil, M. D., Islas-Trejo, A., Cánovas, A. & Medrano, J. F., 1 Jan 2014, In : Journal of Heredity. 105, 3, p. 312-323 12 p.

Research output: Contribution to journalArticle

Ursidae
Phylogeny
Genome
Single Nucleotide Polymorphism
Consensus Sequence
33 Citations (Scopus)

Plant–soil feedbacks of exotic plant species across life forms: A meta-analysis

Meisner, A., Gera Hol, W. H., de Boer, W., Krumins, J. A., Wardle, D. A. & van der Putten, W. H., 1 Jan 2014, In : Biological Invasions. 16, 12, p. 2551-2561 11 p.

Research output: Contribution to journalArticle

meta-analysis
soil biota
soil
forbs
grass
31 Citations (Scopus)

Plant-soil interactions in metal contaminated soils

Krumins, J., Goodey, N. & Gallagher, F., 24 Oct 2014, In : Soil Biology and Biochemistry. 80, p. 224-231 8 p.

Research output: Contribution to journalReview article

soil-plant interactions
polluted soils
Soil
Metals
metals
1 Citation (Scopus)

Tea polyphenolic compounds against herpes simplex viruses

Chu, T. C., Adams, S. D. & Lee, L. H., 1 Jan 2014, Cancer-Causing Viruses and their Inhibitors. CRC Press, p. 321-344 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyphenolic compounds
Tea
Simplexvirus
Metabolites
Viruses
75 Citations (Scopus)

The evolution of the placenta drives a shift in sexual selection in livebearing fish

Pollux, B. J. A., Meredith, R. W., Springer, M. S., Garland, T. & Reznick, D. N., 11 Sep 2014, In : Nature. 513, 7517, p. 233-236 4 p.

Research output: Contribution to journalArticle

Placenta
Fishes
Placentation
Mothers
Superfetation
11 Citations (Scopus)

The evolution of the sexually selected sword in xiphophorus does not compromise aerobic locomotor performance

Oufiero, C. E., Meredith, R., Jugo, K. N., Tran, P., Chappell, M. A., Springer, M. S., Reznick, D. N. & Garland, T., 1 Jan 2014, In : Evolution. 68, 6, p. 1806-1823 18 p.

Research output: Contribution to journalArticle

Cyprinodontiformes
Xiphophorus
sexual selection
interspecific variation
Genetic Fitness
5 Citations (Scopus)

The impact of Japanese knotweed on stream baseflow

Vanderklein, D., Galster, J. & Scherr, R., Apr 2014, In : Ecohydrology. 7, 2, p. 881-886 6 p.

Research output: Contribution to journalArticle

Reynoutria japonica
baseflow
transpiration
leaf area
rivers
7 Citations (Scopus)

To thine own self be false: Self-deceptive enhancement and sexual awareness influences on mating success

Lynn, C. D., Nathan Pipitone, R. & Keenan, J., 1 Apr 2014, In : Evolutionary Behavioral Sciences. 8, 2, p. 109-122 14 p.

Research output: Contribution to journalArticle

Ego
Deception
Nucleic Acid Repetitive Sequences
Heterosexuality
Cues
34 Citations (Scopus)

Vanadium uptake and translocation in dominant plant species on an urban coastal brownfield site

Qian, Y., Gallagher, F. J., Feng, H., Wu, M. S. & Zhu, Q., 1 Apr 2014, In : Science of the Total Environment. 476-477, p. 696-704 9 p.

Research output: Contribution to journalArticle

brownfield site
Vanadium
vanadium
translocation
Soils
2013
2 Citations (Scopus)

A comparative study of wetland vegetation in the ausable and boquet river watersheds

Wu, M. & Kalma, D., 1 Jun 2013, In : Northeastern Naturalist. 20, 2, p. 229-254 26 p.

Research output: Contribution to journalArticle

comparative study
wetlands
wetland
watershed
vegetation
7 Citations (Scopus)

Allometry and photosynthetic capacity of poplar (Populus deltoides) along a metal contamination gradient in an urban brownfield

Renninger, H. J., Wadhwa, S., Gallagher, F. J., Vanderklein, D. & Schäfer, K. V. R., 1 Jan 2013, In : Urban Ecosystems. 16, 2, p. 247-263 17 p.

Research output: Contribution to journalArticle

allometry
environmental pollution
metal
rehabilitation
environmental factors
10 Citations (Scopus)

An analysis of the population genetics of restored Zostera marina plantings in Barnegat Bay, New Jersey

Campanella, J., Bologna, P., Smalley, J. V., Avila, D. N., Lee, K. N., Areche, E. C. & Slavin, L. J., 1 Jan 2013, In : Population Ecology. 55, 1, p. 121-133 13 p.

Research output: Contribution to journalArticle

Zostera marina
marina
population genetics
planting
ecotype
109 Citations (Scopus)

A phylogenetic blueprint for a modern whale

Gatesy, J., Geisler, J. H., Chang, J., Buell, C., Berta, A., Meredith, R. W., Springer, M. S. & McGowen, M. R., 1 Feb 2013, In : Molecular Phylogenetics and Evolution. 66, 2, p. 479-506 28 p.

Research output: Contribution to journalArticle

Cetacea
Whales
whales
whale
phylogenetics

A Ranavirus-related mortality event and the first report of ranavirus in New Jersey

Monsen, K., Hazard, L. & Dolcemascolo, P., 1 Dec 2013, In : Herpetological Review. 44, 2, p. 263-265 3 p.

Research output: Contribution to journalArticle

Ranavirus
mortality
17 Citations (Scopus)

Effect of black tea extract on herpes simplex virus-1 infection of cultured cells

Cantatore, A., Randall, S. D., Traum, D. & Adams, S. D., 18 Jun 2013, In : BMC Complementary and Alternative Medicine. 13, 139.

Research output: Contribution to journalArticle

Human Herpesvirus 1
Tea
Virus Diseases
Cultured Cells
Vero Cells
1 Citation (Scopus)

Evolution of Sindbis Virus with a Low-Methionine-Resistant Phenotype Is Dependent Both on a Pre-Existing Mutation and on the Methionine Concentration in the Medium

Stollar, V., Mensah, V., Adams, S. & Li, M. L., 27 Mar 2013, In : PLoS ONE. 8, 3, e60504.

Research output: Contribution to journalArticle

Sindbis virus
Sindbis Virus
Viruses
Methionine
methionine
150 Citations (Scopus)

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., 10 May 2013, In : Genome Biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome
30 Citations (Scopus)

Inhibition of herpes simplex virus type 1 with the modified green tea polyphenol palmitoyl-epigallocatechin gallate

De Oliveira, A., Adams, S., Lee, L., Murray, S. R., Hsu, S. D., Hammond, J. R., Dickinson, D., Chen, P. & Chu, T. C., 1 Feb 2013, In : Food and Chemical Toxicology. 52, p. 207-215 9 p.

Research output: Contribution to journalArticle

Human herpesvirus 1
epigallocatechin
Human Herpesvirus 1
Polyphenols
green tea
3 Citations (Scopus)

InsertionMapper: A pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data

Xiong, W., He, L., Li, Y., Dooner, H. K. & Du, C., 4 Oct 2013, In : BMC Genomics. 14, 1, 679.

Research output: Contribution to journalArticle

Genome
Zea mays
Reverse Genetics
Polymerase Chain Reaction
Databases
22 Citations (Scopus)

Lead accumulation and association with Fe on Typha latifolia root from an urban brownfield site

Feng, H., Qian, Y., Gallagher, F. J., Wu, M. S., Zhang, W., Yu, L., Zhu, Q., Zhang, K., Liu, C. J. & Tappero, R., 1 Jun 2013, In : Environmental Science and Pollution Research. 20, 6, p. 3743-3750 8 p.

Research output: Contribution to journalArticle

Typhaceae
brownfield site
Remediation
Lead
X-Rays
27 Citations (Scopus)

Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes.

Meredith, R. W., Gatesy, J. & Springer, M. S., 2013, In : Unknown Journal. 13, 1 p.

Research output: Contribution to journalArticle

enamel
turtle
turtles
tooth
teeth
8 Citations (Scopus)
Papilio glaucus
Papilionidae
butterfly
color
gender
5 Citations (Scopus)

Ras-induced melanoma transformation is associated with the proteasomal degradation of the transcriptional repressor ICER

Healey, M., Crow, M. S. & Molina, C., 1 Sep 2013, In : Molecular Carcinogenesis. 52, 9, p. 692-704 13 p.

Research output: Contribution to journalArticle

Melanoma
Repressor Proteins
Cyclin D1
Mitogen-Activated Protein Kinases
Carcinogenesis
66 Citations (Scopus)

Rod Monochromacy and the Coevolution of Cetacean Retinal Opsins

Meredith, R. W., Gatesy, J., Emerling, C. A., York, V. M. & Springer, M. S., 1 Apr 2013, In : PLoS Genetics. 9, 4, e1003432.

Research output: Contribution to journalArticle

Whales
Opsins
rods (retina)
opsin
cetacean
32 Citations (Scopus)

Skeletal muscle triacylglycerol hydrolysis does not influence metabolic complications of obesity

Sitnick, M. T., Basantani, M. K., Cai, L., Schoiswohl, G., Yazbeck, C. F., Distefano, G., Ritov, V., DeLany, J. P., Schreiber, R., Stolz, D. B., Gardner, N. P., Kienesberger, P. C., Pulinilkunnil, T., Zechner, R., Goodpaster, B. H., Coen, P. & Kershaw, E. E., 1 Oct 2013, In : Diabetes. 62, 10, p. 3350-3361 12 p.

Research output: Contribution to journalArticle

Open Access
Skeletal Muscle
Triglycerides
Hydrolysis
Obesity
Lipase
20 Citations (Scopus)

Soil and freshwater and marine sediment food webs: Their structure and function

Krumins, J. A., Van Oevelen, D., Martijn Bezemer, T., De Deyn, G. B., Gera Hol, W. H., Van Donk, E., De Boer, W., De Ruiter, P. C., Middelburg, J. J., Monroy, F., Soetaert, K., Thébault, E., Van De Koppel, J., Van Veen, J. A., Viketoft, M. & Van Der Putten, W. H., 1 Jan 2013, In : BioScience. 63, 1, p. 35-42 8 p.

Research output: Contribution to journalArticle

Geologic Sediments
Food Chain
marine sediments
Fresh Water
food webs
23 Citations (Scopus)

Technical comment on "The placental mammal ancestor and the post-K-Pg radiation of placentals"

Springer, M. S., Meredith, R. W., Teeling, E. C. & Murphy, W. J., 1 Jan 2013, In : Science. 341, 6146, p. 613b

Research output: Contribution to journalComment/debate

Mammals
Nucleotides
Radiation
Viruses
Research
13 Citations (Scopus)

The spectral properties of (-)-epigallocatechin 3-O-gallate (EGCG) fluorescence in different solvents: Dependence on solvent polarity

Snitsarev, V., Young, M. N., Miller, R. M. S. & Rotella, D. P., 22 Nov 2013, In : PLoS ONE. 8, 11, e79834.

Research output: Contribution to journalArticle

epigallocatechin
Fluorescence
fluorescence
dimethyl sulfoxide
Dimethyl Sulfoxide
9 Citations (Scopus)

Transient photocurrent in molecular junctions: Singlet switching on and triplet blocking

Petrov, E. G., Leonov, V. O. & Snitsarev, V., 14 May 2013, In : Journal of Chemical Physics. 138, 18, 184709.

Research output: Contribution to journalArticle

Photocurrents
photocurrents
excitation
Molecules
Excited states
22 Citations (Scopus)

Triptolide induces lysosomal-mediated programmed cell death in MCF-7 breast cancer cells

Owa, C., Messina, M. E. & Halaby, R., 4 Sep 2013, In : International Journal of Women's Health. 5, 1, p. 557-569 13 p.

Research output: Contribution to journalArticle

MCF-7 Cells
Cell Death
Apoptosis
Breast Neoplasms
Peptide Hydrolases