Research Output

2015

Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia

Springer, M. S., Signore, A. V., Paijmans, J. L. A., Vélez-Juarbe, J., Domning, D. P., Bauer, C. E., He, K., Crerar, L., Campos, P. F., Murphy, W. J., Meredith, R. W., Gatesy, J., Willerslev, E., MacPhee, R. D. E., Hofreiter, M. & Campbell, K. L., 1 Oct 2015, In : Molecular Phylogenetics and Evolution. 91, p. 178-193 16 p.

Research output: Contribution to journalArticle

30 Scopus citations

Low temperature tolerance of a sea urchin pathogen: Implications for benthic community dynamics in a warming ocean

Buchwald, R. T., Feehan, C. J., Scheibling, R. E. & Simpson, A. G. B., 1 Aug 2015, In : Journal of Experimental Marine Biology and Ecology. 469, p. 1-9 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Plant productivity, ectomycorrhizae, and metal contamination in urban brownfield soils

Evans, J. M., Parker, A., Gallagher, F. & Krumins, J. A., 1 Jan 2015, In : Soil Science. 180, 4-5, p. 198-206 9 p.

Research output: Contribution to journalArticle

10 Scopus citations
8 Scopus citations

Response of Japanese Barberry to Varying Degrees of Defoliation

Vanderklein, D., Cullen, A. & Belcourt, J. E., 1 Jan 2015, In : Northeastern Naturalist. 22, 2, p. 248-261 14 p.

Research output: Contribution to journalArticle

Root growth responses to soil amendment in an urban brownfield

Gallagher, F. J., Caplan, J. S., Krumins, J. A. & Grabosky, J. C., 1 Jan 2015, In : Ecological Restoration. 33, 1, p. 10-13 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Spectral shifts of mammalian ultravioletsensitive pigments (Short wavelengthsensitive opsin 1) are associated with eye length and photic niche evolution

Emerling, C. A., Huynh, H. T., Nguyen, M. A., Meredith, R. W. & Springer, M. S., 18 Nov 2015, In : Proceedings of the Royal Society B: Biological Sciences. 282, 1819, 20151817.

Research output: Contribution to journalArticle

31 Scopus citations

Sponge cell aggregation: Checkpoints in development indicate a high level of organismal complexity

Eerkes-Medrano, D., Feehan, C. J. & Leys, S. P., 1 Mar 2015, In : Invertebrate Biology. 134, 1, p. 1-18 18 p.

Research output: Contribution to journalArticle

14 Scopus citations

Synchrotron study of metal localization in Typha latifolia L. root sections

Qian, Y., Feng, H., Gallagher, F. J., Zhu, Q., Wu, M., Liu, C. J., Jones, K. W. & Tappero, R. V., 1 Jan 2015, In : Journal of Synchrotron Radiation. 22, p. 1459-1468 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

Topical lipophilic epigallocatechin-3-gallate on herpes labialis: A phase II clinical trial of AverTeaX formula

Zhao, M., Zheng, R., Jiang, J., Dickinson, D., Fu, B., Chu, T. C., Lee, L. H., Pearl, H. & Hsu, S., 1 Dec 2015, In : Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. 120, 6, p. 717-724 8 p.

Research output: Contribution to journalArticle

8 Scopus citations
2 Scopus citations
Open Access
5 Scopus citations
2014

A central support system can facilitate implementation and sustainability of a classroom-based undergraduate research experience (CURE) in genomics

Lopatto, D., Hauser, C., Jones, C. J., Paetkau, D., Chandrasekaran, V., Dunbar, D., MacKinnon, C., Stamm, J., Alvarez, C., Barnard, D., Bedard, J. E. J., Bednarski, A. E., Bhalla, S., Braverman, J. M., Burg, M., Chung, H. M., DeJong, R. J., DiAngelo, J. R., Du, C., Eckdahl, T. T. & 53 others, Emerson, J., Frary, A., Frohlich, D., Goodman, A. L., Gosser, Y., Govind, S., Haberman, A., Hark, A. T., Hoogewerf, A., Johnson, D., Kadlec, L., Kaehler, M., Key, S. C. S., Kokan, N. P., Kopp, O. R., Kuleck, G. A., Lopilato, J., Martinez-Cruzado, J. C., McNeil, G., Mel, S., Nagengast, A., Overvoorde, P. J., Parrish, S., Preuss, M. L., Reed, L. D., Regisford, E. G., Revie, D., Robic, S., Roecklien-Canfield, J. A., Rosenwald, A. G., Rubin, M. R., Saville, K., Schroeder, S., Sharif, K. A., Shaw, M., Skuse, G., Smith, C. D., Smith, M., Smith, S. T., Spana, E. P., Spratt, M., Sreenivasan, A., Thompson, J. S., Wawersik, M., Wolyniak, M. J., Youngblom, J., Zhou, L., Buhler, J., Mardis, E., Leung, W., Shaffer, C. D., Threlfall, J. & Elgin, S. C. R., 21 Dec 2014, In : CBE Life Sciences Education. 13, 4, p. 711-723 13 p.

Research output: Contribution to journalArticle

27 Scopus citations

A course-based research experience: How benefits change with increased investment in instructional time

Shaffer, C. D., Alvarez, C. J., Bednarski, A. E., Dunbar, D., Goodman, A. L., Reinke, C., Rosenwald, A. G., Wolyniak, M. J., Bailey, C., Barnard, D., Bazinet, C., Beach, D. L., Bedard, J. E. J., Bhalla, S., Braverman, J., Burg, M., Chandrasekaran, V., Chung, H. M., Clase, K., DeJong, R. J. & 64 others, DiAngelo, J. R., Du, C., Eckdahl, T. T., Eisler, H., Emerson, J. A., Frary, A., Frohlich, D., Gosser, Y., Govind, S., Haberman, A., Hark, A. T., Hauser, C., Hoogewerf, A., Hoopes, L. L. M., Howell, C. E., Johnson, D., Jones, C. J., Kadlec, L., Kaehler, M., Catherine Silver Key, S., Kleinschmit, A., Kokan, N. P., Kopp, O., Kuleck, G., Leatherman, J., Lopilato, J., MacKinnon, C., Martinez-Cruzado, J. C., McNeil, G., Mel, S., Mistry, H., Nagengast, A., Overvoorde, P., Paetkau, D. W., Parrish, S., Peterson, C. N., Preuss, M., Reed, L. K., Revie, D., Robic, S., Roecklein-Canfield, J., Rubin, M. R., Saville, K., Schroeder, S., Sharif, K., Shaw, M., Skuse, G., Smith, C. D., Smith, M. A., Smith, S. T., Spana, E., Spratt, M., Sreenivasan, A., Stamm, J., Szauter, P., Thompson, J. S., Wawersik, M., Youngblom, J., Zhou, L., Mardis, E. R., Buhler, J., Leung, W., Lopatto, D. & Elgin, S. C. R., 3 Mar 2014, In : CBE Life Sciences Education. 13, 1, p. 111-130 20 p.

Research output: Contribution to journalArticle

62 Scopus citations

Analysis of the population structure of Anaplasma phagocytophilum using multilocus sequence typing

Huhn, C., Winter, C., Wolfsperger, T., Wüppenhorst, N., Strašek Smrdel, K., Skuballa, J., Pfäffle, M., Petney, T., Silaghi, C., Dyachenko, V., Pantchev, N., Straubinger, R. K., Schaarschmidt-Kiener, D., Ganter, M., Aardema, M. L. & Von Loewenich, F. D., 3 Apr 2014, In : PLoS ONE. 9, 4, e93725.

Research output: Contribution to journalArticle

Open Access
48 Scopus citations

An enzymatic analysis of loblolly pine and Sitka spruce auxin conjugate hydrolases and evolutionary implications

Campanella, J. J., Zaben, N., Enriquez, D., Smalley, J. V. & Ludwig-Müller, J., 20 Jul 2014, XII International Symposium on Plant Bioregulators in Fruit Production. McArtney, S. J. & Spann, T. (eds.). International Society for Horticultural Science, p. 79-87 9 p. (Acta Horticulturae; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

A phylogenetic examination of the primary anthocyanin production pathway of the Plantae

Campanella, J. J., Smalley, J. V. & Dempsey, M. E., 25 Jan 2014, In : Botanical Studies. 55, 1

Research output: Contribution to journalArticle

22 Scopus citations

Comparative genomics reveals insights into avian genome evolution and adaptation

Avian Genome Consortium, 12 Dec 2014, In : Science. 346, 6215, p. 1311-1320 10 p.

Research output: Contribution to journalArticle

426 Scopus citations

Differential assessment of designations of wetland status using two delineation methods

Wu, M., Kalma, D. & Treadwell-Steitz, C., 1 Jan 2014, In : Environmental Management. 54, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Disease as a control of sea urchin populations in Nova Scotian kelp beds

Feehan, C. J. & Scheibling, R. E., 17 Mar 2014, In : Marine Ecology Progress Series. 500, p. 149-158 10 p.

Research output: Contribution to journalArticle

8 Scopus citations
4 Scopus citations

Effects of sea urchin disease on coastal marine ecosystems

Feehan, C. J. & Scheibling, R. E., 1 Jan 2014, In : Marine Biology. 161, 7, p. 1467-1485 19 p.

Research output: Contribution to journalReview article

28 Scopus citations

Evidence for a single loss of mineralized teeth in the common avian ancestor

Meredith, R. W., Zhang, G., Gilbert, M. T. P., Jarvis, E. D. & Springer, M. S., 12 Dec 2014, In : Science. 346, 6215, 1254390.

Research output: Contribution to journalArticle

46 Scopus citations

Forest response and recovery following disturbance in upland forests of the Atlantic Coastal Plain

Schäfer, K. V. R., Renninger, H. J., Carlo, N. J. & Vanderklein, D. W., 26 Jun 2014, In : Frontiers in Plant Science. 5, JUN, 294.

Research output: Contribution to journalArticle

4 Scopus citations

Habitat fragmentation reduces occupancy of nest boxes by an open-country raptor

Brown, J. L., Collopy, M. W. & Smallwood, J. A., 17 Sep 2014, In : Bird Conservation International. 24, 3, p. 364-378 15 p.

Research output: Contribution to journalReview article

7 Scopus citations

Harbouring the enemy: Kelp holdfasts protect juvenile sea urchins from predatory crabs

Feehan, C. J., Francis, F. T. Y. & Scheibling, R. E., 1 Jan 2014, In : Marine Ecology Progress Series. 514, p. 149-161 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes

Xiong, W., He, L., Lai, J., Dooner, H. K. & Du, C., 15 Jul 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10263-10268 6 p.

Research output: Contribution to journalArticle

52 Scopus citations

Mangrove loss leads to fish hyperutilization of seagrass beds in a UNESCO biosphere reserve

Bologna, P. A. X., May 2014, In : Journal of Fish Biology. 84, 5, p. 1620-1625 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

Mating behavior, male sensory cilia, and polycystins in caenorhabditis elegans

O'Hagan, R., Wang, J. & Barr, M. M., Sep 2014, In : Seminars in Cell and Developmental Biology. 33, p. 25-33 9 p.

Research output: Contribution to journalReview article

20 Scopus citations

Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics

Crum, K. P., Fuchs, H. L., Bologna, P. A. X. & Gaynor, J. J., 15 Dec 2014, In : Marine Ecology Progress Series. 517, p. 105-119 15 p.

Research output: Contribution to journalArticle

5 Scopus citations

Molecular phylogeny and snp variation of polar bears (ursus maritimus), brown bears (u. arctos), and black bears (u. americanus) derived from genome sequences

Cronin, M. A., Rincon, G., Meredith, R. W., Macneil, M. D., Islas-Trejo, A., Cánovas, A. & Medrano, J. F., 1 Jan 2014, In : Journal of Heredity. 105, 3, p. 312-323 12 p.

Research output: Contribution to journalArticle

14 Scopus citations

Plant–soil feedbacks of exotic plant species across life forms: A meta-analysis

Meisner, A., Gera Hol, W. H., de Boer, W., Krumins, J. A., Wardle, D. A. & van der Putten, W. H., 1 Jan 2014, In : Biological Invasions. 16, 12, p. 2551-2561 11 p.

Research output: Contribution to journalArticle

37 Scopus citations

Plant-soil interactions in metal contaminated soils

Krumins, J. A., Goodey, N. M. & Gallagher, F., 24 Oct 2014, In : Soil Biology and Biochemistry. 80, p. 224-231 8 p.

Research output: Contribution to journalReview article

37 Scopus citations

Tea polyphenolic compounds against herpes simplex viruses

Chu, T. C., Adams, S. D. & Lee, L. H., 1 Jan 2014, Cancer-Causing Viruses and their Inhibitors. CRC Press, p. 321-344 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The evolution of the placenta drives a shift in sexual selection in livebearing fish

Pollux, B. J. A., Meredith, R. W., Springer, M. S., Garland, T. & Reznick, D. N., 11 Sep 2014, In : Nature. 513, 7517, p. 233-236 4 p.

Research output: Contribution to journalArticle

84 Scopus citations

The evolution of the sexually selected sword in xiphophorus does not compromise aerobic locomotor performance

Oufiero, C. E., Meredith, R. W., Jugo, K. N., Tran, P., Chappell, M. A., Springer, M. S., Reznick, D. N. & Garland, T., 1 Jan 2014, In : Evolution. 68, 6, p. 1806-1823 18 p.

Research output: Contribution to journalArticle

11 Scopus citations

The impact of Japanese knotweed on stream baseflow

Vanderklein, D. W., Galster, J. & Scherr, R., Apr 2014, In : Ecohydrology. 7, 2, p. 881-886 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

To thine own self be false: Self-deceptive enhancement and sexual awareness influences on mating success

Lynn, C. D., Nathan Pipitone, R. & Keenan, J. P., 1 Apr 2014, In : Evolutionary Behavioral Sciences. 8, 2, p. 109-122 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Vanadium uptake and translocation in dominant plant species on an urban coastal brownfield site

Qian, Y., Gallagher, F. J., Feng, H., Wu, M. & Zhu, Q., 1 Apr 2014, In : Science of the Total Environment. 476-477, p. 696-704 9 p.

Research output: Contribution to journalArticle

38 Scopus citations
2013

A comparative study of wetland vegetation in the ausable and boquet river watersheds

Wu, M. & Kalma, D., 1 Jun 2013, In : Northeastern Naturalist. 20, 2, p. 229-254 26 p.

Research output: Contribution to journalArticle

3 Scopus citations

Allometry and photosynthetic capacity of poplar (Populus deltoides) along a metal contamination gradient in an urban brownfield

Renninger, H. J., Wadhwa, S., Gallagher, F. J., Vanderklein, D. & Schäfer, K. V. R., 1 Jan 2013, In : Urban Ecosystems. 16, 2, p. 247-263 17 p.

Research output: Contribution to journalArticle

9 Scopus citations

An analysis of the population genetics of restored Zostera marina plantings in Barnegat Bay, New Jersey

Campanella, J. J., Bologna, P. A. X., Smalley, J. V., Avila, D. N., Lee, K. N., Areche, E. C. & Slavin, L. J., 1 Jan 2013, In : Population Ecology. 55, 1, p. 121-133 13 p.

Research output: Contribution to journalArticle

10 Scopus citations

A phylogenetic blueprint for a modern whale

Gatesy, J., Geisler, J. H., Chang, J., Buell, C., Berta, A., Meredith, R. W., Springer, M. S. & McGowen, M. R., 1 Feb 2013, In : Molecular Phylogenetics and Evolution. 66, 2, p. 479-506 28 p.

Research output: Contribution to journalArticle

118 Scopus citations

A Ranavirus-related mortality event and the first report of ranavirus in New Jersey

Monsen-Collar, K., Hazard, L. & Dolcemascolo, P., 1 Dec 2013, In : Herpetological Review. 44, 2, p. 263-265 3 p.

Research output: Contribution to journalArticle

Effect of black tea extract on herpes simplex virus-1 infection of cultured cells

Cantatore, A., Randall, S. D., Traum, D. & Adams, S. D., 18 Jun 2013, In : BMC Complementary and Alternative Medicine. 13, 139.

Research output: Contribution to journalArticle

21 Scopus citations

Evolution of Sindbis Virus with a Low-Methionine-Resistant Phenotype Is Dependent Both on a Pre-Existing Mutation and on the Methionine Concentration in the Medium

Stollar, V., Mensah, V., Adams, S. & Li, M. L., 27 Mar 2013, In : PLoS ONE. 8, 3, e60504.

Research output: Contribution to journalArticle

3 Scopus citations

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., 10 May 2013, In : Genome Biology. 14, 5, R41.

Research output: Contribution to journalArticle

166 Scopus citations

Inhibition of herpes simplex virus type 1 with the modified green tea polyphenol palmitoyl-epigallocatechin gallate

De Oliveira, A., Adams, S. D., Lee, L. H., Murray, S. R., Hsu, S. D., Hammond, J. R., Dickinson, D., Chen, P. & Chu, T. C., 1 Feb 2013, In : Food and Chemical Toxicology. 52, p. 207-215 9 p.

Research output: Contribution to journalArticle

35 Scopus citations

InsertionMapper: A pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data

Xiong, W., He, L., Li, Y., Dooner, H. K. & Du, C., 4 Oct 2013, In : BMC Genomics. 14, 1, 679.

Research output: Contribution to journalArticle

3 Scopus citations

Lead accumulation and association with Fe on Typha latifolia root from an urban brownfield site

Feng, H., Qian, Y., Gallagher, F. J., Wu, M., Zhang, W., Yu, L., Zhu, Q., Zhang, K., Liu, C. J. & Tappero, R., 1 Jun 2013, In : Environmental Science and Pollution Research. 20, 6, p. 3743-3750 8 p.

Research output: Contribution to journalArticle

23 Scopus citations