Ancient marine sediment DNA reveals diatom transition in Antarctica

Linda Armbrecht; Michael E. Weber; Maureen E. Raymo; Victoria L. Peck; Trevor Williams; Jonathan Warnock; Yuji Kato; Iván Hernández-Almeida; Frida Hoem; Brendan Reilly; Sidney Hemming; Ian Bailey; Yasmina M. Martos; Marcus Gutjahr; Vincent Percuoco; Claire Allen; Stefanie Brachfeld; Fabricio G. Cardillo; Zhiheng Du; Gerson Fauth; Chris Fogwill; Marga Garcia; Anna Glüder; Michelle Guitard; Ji Hwan Hwang; Mutsumi Iizuka; Bridget Kenlee; Suzanne O’Connell; Lara F. Pérez; Thomas A. Ronge; Osamu Seki; Lisa Tauxe; Shubham Tripathi; Xufeng Zheng

doi:10.1038/s41467-022-33494-4

Ancient marine sediment DNA reveals diatom transition in Antarctica

Linda Armbrecht, Michael E. Weber, Maureen E. Raymo, Victoria L. Peck, Trevor Williams, Jonathan Warnock, Yuji Kato, Iván Hernández-Almeida, Frida Hoem, Brendan Reilly, Sidney Hemming, Ian Bailey, Yasmina M. Martos, Marcus Gutjahr, Vincent Percuoco, Claire Allen, Stefanie Brachfeld, Fabricio G. Cardillo, Zhiheng Du, Gerson FauthChris Fogwill, Marga Garcia, Anna Glüder, Michelle Guitard, Ji Hwan Hwang, Mutsumi Iizuka, Bridget Kenlee, Suzanne O’Connell, Lara F. Pérez, Thomas A. Ronge, Osamu Seki, Lisa Tauxe, Shubham Tripathi, Xufeng Zheng

Earth and Environmental Studies

Research output: Contribution to journal › Article › peer-review

30 Scopus citations

Abstract

Antarctica is one of the most vulnerable regions to climate change on Earth and studying the past and present responses of this polar marine ecosystem to environmental change is a matter of urgency. Sedimentary ancient DNA (sedaDNA) analysis can provide such insights into past ecosystem-wide changes. Here we present authenticated (through extensive contamination control and sedaDNA damage analysis) metagenomic marine eukaryote sedaDNA from the Scotia Sea region acquired during IODP Expedition 382. We also provide a marine eukaryote sedaDNA record of ~1 Mio. years and diatom and chlorophyte sedaDNA dating back to ~540 ka (using taxonomic marker genes SSU, LSU, psbO). We find evidence of warm phases being associated with high relative diatom abundance, and a marked transition from diatoms comprising <10% of all eukaryotes prior to ~14.5 ka, to ~50% after this time, i.e., following Meltwater Pulse 1A, alongside a composition change from sea-ice to open-ocean species. Our study demonstrates that sedaDNA tools can be expanded to hundreds of thousands of years, opening the pathway to the study of ecosystem-wide marine shifts and paleo-productivity phases throughout multiple glacial-interglacial cycles.

Original language	English
Article number	5787
Journal	Nature Communications
Volume	13
Issue number	1
DOIs	https://doi.org/10.1038/s41467-022-33494-4
State	Published - Dec 2022

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Armbrecht, L., Weber, M. E., Raymo, M. E., Peck, V. L., Williams, T., Warnock, J., Kato, Y., Hernández-Almeida, I., Hoem, F., Reilly, B., Hemming, S., Bailey, I., Martos, Y. M., Gutjahr, M., Percuoco, V., Allen, C., Brachfeld, S., Cardillo, F. G., Du, Z., ... Zheng, X. (2022). Ancient marine sediment DNA reveals diatom transition in Antarctica. Nature Communications, 13(1), Article 5787. https://doi.org/10.1038/s41467-022-33494-4

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title = "Ancient marine sediment DNA reveals diatom transition in Antarctica",

abstract = "Antarctica is one of the most vulnerable regions to climate change on Earth and studying the past and present responses of this polar marine ecosystem to environmental change is a matter of urgency. Sedimentary ancient DNA (sedaDNA) analysis can provide such insights into past ecosystem-wide changes. Here we present authenticated (through extensive contamination control and sedaDNA damage analysis) metagenomic marine eukaryote sedaDNA from the Scotia Sea region acquired during IODP Expedition 382. We also provide a marine eukaryote sedaDNA record of ~1 Mio. years and diatom and chlorophyte sedaDNA dating back to ~540 ka (using taxonomic marker genes SSU, LSU, psbO). We find evidence of warm phases being associated with high relative diatom abundance, and a marked transition from diatoms comprising <10% of all eukaryotes prior to ~14.5 ka, to ~50% after this time, i.e., following Meltwater Pulse 1A, alongside a composition change from sea-ice to open-ocean species. Our study demonstrates that sedaDNA tools can be expanded to hundreds of thousands of years, opening the pathway to the study of ecosystem-wide marine shifts and paleo-productivity phases throughout multiple glacial-interglacial cycles.",

author = "Linda Armbrecht and Weber, {Michael E.} and Raymo, {Maureen E.} and Peck, {Victoria L.} and Trevor Williams and Jonathan Warnock and Yuji Kato and Iv{\'a}n Hern{\'a}ndez-Almeida and Frida Hoem and Brendan Reilly and Sidney Hemming and Ian Bailey and Martos, {Yasmina M.} and Marcus Gutjahr and Vincent Percuoco and Claire Allen and Stefanie Brachfeld and Cardillo, {Fabricio G.} and Zhiheng Du and Gerson Fauth and Chris Fogwill and Marga Garcia and Anna Gl{\"u}der and Michelle Guitard and Hwang, {Ji Hwan} and Mutsumi Iizuka and Bridget Kenlee and Suzanne O{\textquoteright}Connell and P{\'e}rez, {Lara F.} and Ronge, {Thomas A.} and Osamu Seki and Lisa Tauxe and Shubham Tripathi and Xufeng Zheng",

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Armbrecht, L, Weber, ME, Raymo, ME, Peck, VL, Williams, T, Warnock, J, Kato, Y, Hernández-Almeida, I, Hoem, F, Reilly, B, Hemming, S, Bailey, I, Martos, YM, Gutjahr, M, Percuoco, V, Allen, C, Brachfeld, S, Cardillo, FG, Du, Z, Fauth, G, Fogwill, C, Garcia, M, Glüder, A, Guitard, M, Hwang, JH, Iizuka, M, Kenlee, B, O’Connell, S, Pérez, LF, Ronge, TA, Seki, O, Tauxe, L, Tripathi, S & Zheng, X 2022, 'Ancient marine sediment DNA reveals diatom transition in Antarctica', Nature Communications, vol. 13, no. 1, 5787. https://doi.org/10.1038/s41467-022-33494-4

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AU - Armbrecht, Linda

AU - Weber, Michael E.

AU - Raymo, Maureen E.

AU - Peck, Victoria L.

AU - Williams, Trevor

AU - Warnock, Jonathan

AU - Kato, Yuji

AU - Hernández-Almeida, Iván

AU - Hoem, Frida

AU - Reilly, Brendan

AU - Hemming, Sidney

AU - Bailey, Ian

AU - Martos, Yasmina M.

AU - Gutjahr, Marcus

AU - Percuoco, Vincent

AU - Allen, Claire

AU - Brachfeld, Stefanie

AU - Cardillo, Fabricio G.

AU - Du, Zhiheng

AU - Fauth, Gerson

AU - Fogwill, Chris

AU - Garcia, Marga

AU - Glüder, Anna

AU - Guitard, Michelle

AU - Hwang, Ji Hwan

AU - Iizuka, Mutsumi

AU - Kenlee, Bridget

AU - O’Connell, Suzanne

AU - Pérez, Lara F.

AU - Ronge, Thomas A.

AU - Seki, Osamu

AU - Tauxe, Lisa

AU - Tripathi, Shubham

AU - Zheng, Xufeng

PY - 2022/12

Y1 - 2022/12

N2 - Antarctica is one of the most vulnerable regions to climate change on Earth and studying the past and present responses of this polar marine ecosystem to environmental change is a matter of urgency. Sedimentary ancient DNA (sedaDNA) analysis can provide such insights into past ecosystem-wide changes. Here we present authenticated (through extensive contamination control and sedaDNA damage analysis) metagenomic marine eukaryote sedaDNA from the Scotia Sea region acquired during IODP Expedition 382. We also provide a marine eukaryote sedaDNA record of ~1 Mio. years and diatom and chlorophyte sedaDNA dating back to ~540 ka (using taxonomic marker genes SSU, LSU, psbO). We find evidence of warm phases being associated with high relative diatom abundance, and a marked transition from diatoms comprising <10% of all eukaryotes prior to ~14.5 ka, to ~50% after this time, i.e., following Meltwater Pulse 1A, alongside a composition change from sea-ice to open-ocean species. Our study demonstrates that sedaDNA tools can be expanded to hundreds of thousands of years, opening the pathway to the study of ecosystem-wide marine shifts and paleo-productivity phases throughout multiple glacial-interglacial cycles.

AB - Antarctica is one of the most vulnerable regions to climate change on Earth and studying the past and present responses of this polar marine ecosystem to environmental change is a matter of urgency. Sedimentary ancient DNA (sedaDNA) analysis can provide such insights into past ecosystem-wide changes. Here we present authenticated (through extensive contamination control and sedaDNA damage analysis) metagenomic marine eukaryote sedaDNA from the Scotia Sea region acquired during IODP Expedition 382. We also provide a marine eukaryote sedaDNA record of ~1 Mio. years and diatom and chlorophyte sedaDNA dating back to ~540 ka (using taxonomic marker genes SSU, LSU, psbO). We find evidence of warm phases being associated with high relative diatom abundance, and a marked transition from diatoms comprising <10% of all eukaryotes prior to ~14.5 ka, to ~50% after this time, i.e., following Meltwater Pulse 1A, alongside a composition change from sea-ice to open-ocean species. Our study demonstrates that sedaDNA tools can be expanded to hundreds of thousands of years, opening the pathway to the study of ecosystem-wide marine shifts and paleo-productivity phases throughout multiple glacial-interglacial cycles.

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DO - 10.1038/s41467-022-33494-4

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VL - 13

JO - Nature Communications

JF - Nature Communications

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Ancient marine sediment DNA reveals diatom transition in Antarctica

Abstract

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