CGKB - Cyanogroup genomics knowledge base

Tin N. Chu, Lee Lee, Shankar Srinivasan, John Gaynor, Quinn Vega, Bonnie K. Lustigman

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Cyanobacteria and the cyanophage that infect these bacteria are abundant throughout fresh water and marine ecosystems. Unfortunately, the knowledge of genomic interaction between these cyanophages and their hosts are limited due to the lack of integration of the cyanogroup information. To remedy this deficiency, a Cyanogroup Genomics Knowledge Base (CGKB) for cyanophages and cyanobacteria has been initiated: http://www.cvanogroup.com/. This knowledge base includes: (1) the literature database of freshwater and marine cyanogroups; (2) the genomic database of these cyanogroups including NCBI GenBank data and sequence data from both our laboratory and that of other researchers; (3) data analysis - DNA, protein sequences and phylogenetic analysis; (4) relevant links for the cyanogroups. Regular updates of the local database will be performed to maintain the high accuracy of the analysis and BLAST searches. CGKB also provides sequence and phylogenetic analysis tools for users to search and query any related information stored in the database.

Original languageEnglish
Title of host publicationProceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05
Pages18-24
Number of pages7
StatePublished - 1 Dec 2005
Event2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05 - Las Vegas, NV, United States
Duration: 20 Jun 200523 Jun 2005

Publication series

NameProceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05

Other

Other2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05
CountryUnited States
CityLas Vegas, NV
Period20/06/0523/06/05

Fingerprint

Knowledge Base
Genomics
Phylogenetic Analysis
Cyanobacteria
Aquatic ecosystems
Sequence Analysis
Protein Sequence
Ecosystem
Bacteria
Data analysis
High Accuracy
DNA
Update
Query
Proteins
Water
Interaction

Keywords

  • Cyanobacteria
  • Cyanophage
  • Genomics
  • Knowledge base

Cite this

Chu, T. N., Lee, L., Srinivasan, S., Gaynor, J., Vega, Q., & Lustigman, B. K. (2005). CGKB - Cyanogroup genomics knowledge base. In Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05 (pp. 18-24). (Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05).
Chu, Tin N. ; Lee, Lee ; Srinivasan, Shankar ; Gaynor, John ; Vega, Quinn ; Lustigman, Bonnie K. / CGKB - Cyanogroup genomics knowledge base. Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05. 2005. pp. 18-24 (Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05).
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abstract = "Cyanobacteria and the cyanophage that infect these bacteria are abundant throughout fresh water and marine ecosystems. Unfortunately, the knowledge of genomic interaction between these cyanophages and their hosts are limited due to the lack of integration of the cyanogroup information. To remedy this deficiency, a Cyanogroup Genomics Knowledge Base (CGKB) for cyanophages and cyanobacteria has been initiated: http://www.cvanogroup.com/. This knowledge base includes: (1) the literature database of freshwater and marine cyanogroups; (2) the genomic database of these cyanogroups including NCBI GenBank data and sequence data from both our laboratory and that of other researchers; (3) data analysis - DNA, protein sequences and phylogenetic analysis; (4) relevant links for the cyanogroups. Regular updates of the local database will be performed to maintain the high accuracy of the analysis and BLAST searches. CGKB also provides sequence and phylogenetic analysis tools for users to search and query any related information stored in the database.",
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Chu, TN, Lee, L, Srinivasan, S, Gaynor, J, Vega, Q & Lustigman, BK 2005, CGKB - Cyanogroup genomics knowledge base. in Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05. Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05, pp. 18-24, 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05, Las Vegas, NV, United States, 20/06/05.

CGKB - Cyanogroup genomics knowledge base. / Chu, Tin N.; Lee, Lee; Srinivasan, Shankar; Gaynor, John; Vega, Quinn; Lustigman, Bonnie K.

Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05. 2005. p. 18-24 (Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

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Chu TN, Lee L, Srinivasan S, Gaynor J, Vega Q, Lustigman BK. CGKB - Cyanogroup genomics knowledge base. In Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05. 2005. p. 18-24. (Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05).