Lineage path integration for phylogenetic resources

Katherine Herbert, Shashikanth Puspati, Jason T.L. Wang, William H. Piel

Research output: Contribution to journalConference articleResearchpeer-review

1 Citation (Scopus)

Abstract

With the increase of genome and proteome data, phylogenetic information and phylogenetic analysis tools are increasing greatly in current biological repositories. First, many repositories allow users to browse information about species through taxonomic tools. These tools present the species with its lineage path and links to the various types of information the repository provides about the species. Second, some multiple sequence alignment tools offer users basic phylogenetic data through applying basic reconstruction algorithms to the alignment. With the availability of this information in multiple locations, integrated tools are needed to allow the user to compare this data. This paper presents data integration research on lineage paths using the BIO-AJAX framework. It introduces BIO-AJAX for Lineage Paths, a tool that integrates lineage path information for NCBI Taxonomy Database [1] and the Integrated Taxonomic Information System (ITIS)[6].

Original languageEnglish
Pages (from-to)117-120
Number of pages4
JournalProceedings of the International Conference on Scientific and Statistical Database Management, SSDBM
StatePublished - 1 Dec 2005
Event17th International Conference Scientific and Statistical Database Management, SSDBM 2005 - Santa Barbara, CA, United States
Duration: 27 Jun 200529 Jun 2005

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title = "Lineage path integration for phylogenetic resources",
abstract = "With the increase of genome and proteome data, phylogenetic information and phylogenetic analysis tools are increasing greatly in current biological repositories. First, many repositories allow users to browse information about species through taxonomic tools. These tools present the species with its lineage path and links to the various types of information the repository provides about the species. Second, some multiple sequence alignment tools offer users basic phylogenetic data through applying basic reconstruction algorithms to the alignment. With the availability of this information in multiple locations, integrated tools are needed to allow the user to compare this data. This paper presents data integration research on lineage paths using the BIO-AJAX framework. It introduces BIO-AJAX for Lineage Paths, a tool that integrates lineage path information for NCBI Taxonomy Database [1] and the Integrated Taxonomic Information System (ITIS)[6].",
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Lineage path integration for phylogenetic resources. / Herbert, Katherine; Puspati, Shashikanth; Wang, Jason T.L.; Piel, William H.

In: Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM, 01.12.2005, p. 117-120.

Research output: Contribution to journalConference articleResearchpeer-review

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AU - Herbert, Katherine

AU - Puspati, Shashikanth

AU - Wang, Jason T.L.

AU - Piel, William H.

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N2 - With the increase of genome and proteome data, phylogenetic information and phylogenetic analysis tools are increasing greatly in current biological repositories. First, many repositories allow users to browse information about species through taxonomic tools. These tools present the species with its lineage path and links to the various types of information the repository provides about the species. Second, some multiple sequence alignment tools offer users basic phylogenetic data through applying basic reconstruction algorithms to the alignment. With the availability of this information in multiple locations, integrated tools are needed to allow the user to compare this data. This paper presents data integration research on lineage paths using the BIO-AJAX framework. It introduces BIO-AJAX for Lineage Paths, a tool that integrates lineage path information for NCBI Taxonomy Database [1] and the Integrated Taxonomic Information System (ITIS)[6].

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JO - Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM

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