TY - GEN
T1 - Mobile interaction and query optimization in a protein-ligand data analysis system
AU - Lapeine, Marvin
AU - Herbert, Katherine G.
AU - Hill, Emily
AU - Goodey, Nina M.
PY - 2013
Y1 - 2013
N2 - With current trends in integrating phylogenetic analysis into pharma-research, Computing systems that integrate the two areas can help the drug discovery field. DrugTree is a tool that overlays ligand data on a protein-motivated phylogenetic tree. While initial tests of DrugTree are successful, it has been noticed that there are a number of lags concerning querying the tree. Due to the interleaving nature of the data, query optimization can become problematic since the data is being obtained from multiple sources, integrated and then presented to the user with the phylogenetic imposed upon the phylogenetic analysis layer. This poster presents our initial methodologies for addressing the query optimization issues. Our approach applies standards as well as uses novel mechanisms to help improve performance time.
AB - With current trends in integrating phylogenetic analysis into pharma-research, Computing systems that integrate the two areas can help the drug discovery field. DrugTree is a tool that overlays ligand data on a protein-motivated phylogenetic tree. While initial tests of DrugTree are successful, it has been noticed that there are a number of lags concerning querying the tree. Due to the interleaving nature of the data, query optimization can become problematic since the data is being obtained from multiple sources, integrated and then presented to the user with the phylogenetic imposed upon the phylogenetic analysis layer. This poster presents our initial methodologies for addressing the query optimization issues. Our approach applies standards as well as uses novel mechanisms to help improve performance time.
KW - Bioinformatics
KW - Data integration
KW - Pharmaceutical informatics
KW - Phylogenetics
KW - Query processing
UR - http://www.scopus.com/inward/record.url?scp=84880539078&partnerID=8YFLogxK
U2 - 10.1145/2463676.2465344
DO - 10.1145/2463676.2465344
M3 - Conference contribution
AN - SCOPUS:84880539078
SN - 9781450320375
T3 - Proceedings of the ACM SIGMOD International Conference on Management of Data
SP - 1291
BT - SIGMOD 2013 - International Conference on Management of Data
T2 - 2013 ACM SIGMOD Conference on Management of Data, SIGMOD 2013
Y2 - 22 June 2013 through 27 June 2013
ER -