TY - GEN
T1 - Toward an integrated RNA motif database
AU - Wang, Jason T.L.
AU - Wen, Dongrong
AU - Shapiro, Bruce A.
AU - Herbert, Katherine G.
AU - Li, Jing
AU - Ghosh, Kaushik
PY - 2007/8/3
Y1 - 2007/8/3
N2 - In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/
AB - In this paper we present the design and implementation of an RNA structural motif database, called RmotifDB. The structural motifs stored in RmotifDB come from three sources: (1) collected manually from biomedical literature; (2) submitted by scientists around the world; and (3) discovered by a wide variety of motif mining methods. We present here a motif mining method in detail. We also describe the interface and search mechanisms provided by RmotifDB as well as techniques used to integrate RmotifDB with the Gene Ontology. The RmotifDB system is fully operational and accessible on the Internet at http://datalab.njit.edu/bioinfo/
UR - http://www.scopus.com/inward/record.url?scp=34547395842&partnerID=8YFLogxK
M3 - Conference contribution
AN - SCOPUS:34547395842
SN - 3540732543
SN - 9783540732549
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 27
EP - 36
BT - Data Integration in the Life Sciences - 4th International Workshop, DILS 2007, Proceedings
T2 - 4th International Workshop on Data Integration in the Life Sciences, DILS 2007
Y2 - 27 June 2007 through 29 June 2007
ER -